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  5. Sobic.001G242700.1

Sobic.001G242700.1


Description : BTB-POZ and MATH domain 1


Gene families : OG_01_0077006 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0077006_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G242700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G242700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_44
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_93


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0016567 protein ubiquitination ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011333 SKP1/BTB/POZ_sf Gene3D 179 303
IPR002083 MATH/TRAF_dom CDD 25 163
IPR002083 MATH/TRAF_dom SMART 29 145
IPR000210 BTB/POZ_dom SMART 203 308
IPR000210 BTB/POZ_dom ProSiteProfiles 203 272
IPR002083 MATH/TRAF_dom Pfam 41 164
IPR008974 TRAF-like Gene3D 23 166
IPR045005 BPM1-6 PANTHER 13 366
IPR011333 SKP1/BTB/POZ_sf SUPERFAMILY 181 308
IPR000210 BTB/POZ_dom Pfam 194 307
IPR002083 MATH/TRAF_dom ProSiteProfiles 24 162

No CAZYmes available for this sequence

No external refs found!