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  5. Sobic.001G268700.1

Sobic.001G268700.1


Description : Glycosyl hydrolase family 38 protein


Gene families : OG_01_0000133 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000133_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G268700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G268700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_38
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_32


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004559 alpha-mannosidase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006013 mannose metabolic process ISM GOs from InterProScan
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000602 Glyco_hydro_38_N Pfam 41 353
IPR011330 Glyco_hydro/deAcase_b/a-brl SUPERFAMILY 30 354
IPR037094 Glyco_hydro_38_cen_sf Gene3D 401 456
IPR037094 Glyco_hydro_38_cen_sf Gene3D 322 400
IPR015341 Glyco_hydro_38_cen SMART 358 432
IPR041147 GH38_C Pfam 899 1004
IPR013780 Glyco_hydro_b Gene3D 466 577
IPR015341 Glyco_hydro_38_cen Pfam 358 450
IPR027291 Glyco_hydro_38_N_sf Gene3D 40 321
IPR011682 Glyco_hydro_38_C Pfam 605 817
IPR028995 Glyco_hydro_57/38_cen_sf SUPERFAMILY 357 452
IPR011013 Gal_mutarotase_sf_dom SUPERFAMILY 458 1007
HMM Family HMM Length Query Length e-Value Query Start Query End
GH38 269 1008 6.1e-77 41 353
No external refs found!