Sobic.001G269100.2

Description : Glycosyl hydrolase family 38 protein

Gene families : OG_01_0000133 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000133_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G269100.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G269100.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_36

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004559	alpha-mannosidase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006013	mannose metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0015923	mannosidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
MF	GO:0030246	carbohydrate binding	ISM	GOs from InterProScan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR037094	Glyco_hydro_38_cen_sf	Gene3D	309	364
IPR015341	Glyco_hydro_38_cen	Pfam	266	356
IPR011330	Glyco_hydro/deAcase_b/a-brl	SUPERFAMILY	5	262
IPR015341	Glyco_hydro_38_cen	SMART	266	340
IPR027291	Glyco_hydro_38_N_sf	Gene3D	5	229
IPR037094	Glyco_hydro_38_cen_sf	Gene3D	230	308
IPR013780	Glyco_hydro_b	Gene3D	374	485
IPR011013	Gal_mutarotase_sf_dom	SUPERFAMILY	367	913
IPR041147	GH38_C	Pfam	805	910
IPR028995	Glyco_hydro_57/38_cen_sf	SUPERFAMILY	265	360
IPR011682	Glyco_hydro_38_C	Pfam	510	722
IPR000602	Glyco_hydro_38_N	Pfam	6	261

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH38	269	914	1.3e-56	6	261

External Links

No external refs found!