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  5. Sobic.001G301000.1

Sobic.001G301000.1


Description : expansin B2


Gene families : OG_01_0000116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000116_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G301000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G301000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_173
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_8


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR005795 LolPI PRINTS 227 244
IPR005795 LolPI PRINTS 110 120
IPR005795 LolPI PRINTS 88 99
IPR005795 LolPI PRINTS 149 164
IPR005795 LolPI PRINTS 247 264
IPR005795 LolPI PRINTS 127 142
IPR005795 LolPI PRINTS 181 196
IPR005795 LolPI PRINTS 197 212
IPR009009 RlpA-like_DPBB Pfam 86 167
IPR007118 Expan_Lol_pI PRINTS 218 232
IPR007118 Expan_Lol_pI PRINTS 48 63
IPR007118 Expan_Lol_pI PRINTS 90 108
IPR007118 Expan_Lol_pI PRINTS 257 271
IPR007118 Expan_Lol_pI PRINTS 160 176
IPR007118 Expan_Lol_pI PRINTS 68 86
IPR036908 RlpA-like_sf Gene3D 32 173
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 69 177
IPR007117 Expansin_CBD ProSiteProfiles 190 271
IPR036749 Expansin_CBD_sf SUPERFAMILY 178 271
IPR036749 Expansin_CBD_sf Gene3D 174 276
IPR007117 Expansin_CBD Pfam 179 260
IPR036908 RlpA-like_sf SUPERFAMILY 45 176
IPR007112 Expansin/allergen_DPBB_dom SMART 86 167
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM63 78 277 0.00045 181 255
No external refs found!