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  5. Sobic.001G301400.1

Sobic.001G301400.1


Description : expansin B2


Gene families : OG_01_0000116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000116_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G301400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G301400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_138


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR005795 LolPI PRINTS 89 100
IPR005795 LolPI PRINTS 151 166
IPR005795 LolPI PRINTS 111 121
IPR005795 LolPI PRINTS 199 214
IPR005795 LolPI PRINTS 183 198
IPR005795 LolPI PRINTS 229 246
IPR005795 LolPI PRINTS 249 266
IPR036908 RlpA-like_sf SUPERFAMILY 42 178
IPR007117 Expansin_CBD ProSiteProfiles 192 273
IPR036749 Expansin_CBD_sf SUPERFAMILY 179 272
IPR007117 Expansin_CBD Pfam 181 262
IPR009009 RlpA-like_DPBB Pfam 87 169
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 70 179
IPR036749 Expansin_CBD_sf Gene3D 175 273
IPR007118 Expan_Lol_pI PRINTS 220 234
IPR007118 Expan_Lol_pI PRINTS 162 178
IPR007118 Expan_Lol_pI PRINTS 259 273
IPR007118 Expan_Lol_pI PRINTS 91 109
IPR007118 Expan_Lol_pI PRINTS 49 64
IPR007118 Expan_Lol_pI PRINTS 69 87
IPR036908 RlpA-like_sf Gene3D 34 174

No CAZYmes available for this sequence

No external refs found!