- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : expansin B2
Gene families : OG_01_0000116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000116_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G301600.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G301600.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_16 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005576 | extracellular region | ISM | GOs from InterProScan |
| BP | GO:0019953 | sexual reproduction | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR007112 | Expansin/allergen_DPBB_dom | SMART | 91 | 172 |
| IPR007112 | Expansin/allergen_DPBB_dom | ProSiteProfiles | 74 | 182 |
| IPR007118 | Expan_Lol_pI | PRINTS | 95 | 113 |
| IPR007118 | Expan_Lol_pI | PRINTS | 165 | 181 |
| IPR007118 | Expan_Lol_pI | PRINTS | 223 | 237 |
| IPR007118 | Expan_Lol_pI | PRINTS | 53 | 68 |
| IPR007118 | Expan_Lol_pI | PRINTS | 262 | 276 |
| IPR007118 | Expan_Lol_pI | PRINTS | 73 | 91 |
| IPR009009 | RlpA-like_DPBB | Pfam | 91 | 171 |
| IPR036908 | RlpA-like_sf | SUPERFAMILY | 47 | 181 |
| IPR036749 | Expansin_CBD_sf | SUPERFAMILY | 183 | 276 |
| IPR036749 | Expansin_CBD_sf | Gene3D | 181 | 280 |
| IPR005795 | LolPI | PRINTS | 115 | 125 |
| IPR005795 | LolPI | PRINTS | 232 | 249 |
| IPR005795 | LolPI | PRINTS | 132 | 147 |
| IPR005795 | LolPI | PRINTS | 186 | 201 |
| IPR005795 | LolPI | PRINTS | 93 | 104 |
| IPR005795 | LolPI | PRINTS | 154 | 169 |
| IPR005795 | LolPI | PRINTS | 252 | 269 |
| IPR005795 | LolPI | PRINTS | 202 | 217 |
| IPR036908 | RlpA-like_sf | Gene3D | 37 | 178 |
| IPR007117 | Expansin_CBD | ProSiteProfiles | 195 | 276 |
| IPR007117 | Expansin_CBD | Pfam | 184 | 265 |
| HMM Family | HMM Length | Query Length | e-Value | Query Start | Query End |
|---|---|---|---|---|---|
| CBM63 | 78 | 283 | 0.00019 | 186 | 261 |
| No external refs found! |