Sevir.8G076201.1

Description : mitochondrial editing factor 22

Gene families : OG_01_0006365 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006365_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.8G076201.1	No neighbors in network
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.8G076201.1
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_29

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	384	418
IPR002885	Pentatricopeptide_rpt	TIGRFAM	459	483
IPR002885	Pentatricopeptide_rpt	TIGRFAM	388	419
IPR002885	Pentatricopeptide_rpt	TIGRFAM	285	315
IPR002885	Pentatricopeptide_rpt	TIGRFAM	184	218
IPR002885	Pentatricopeptide_rpt	TIGRFAM	80	114
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	283	317
IPR011990	TPR-like_helical_dom_sf	Gene3D	359	559
IPR011990	TPR-like_helical_dom_sf	Gene3D	232	358
IPR011990	TPR-like_helical_dom_sf	Gene3D	7	129
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	78	113
IPR045215	PPR_prot_At1g15510	PANTHER	9	560
IPR002885	Pentatricopeptide_rpt	Pfam	525	551
IPR002885	Pentatricopeptide_rpt	Pfam	459	482
IPR002885	Pentatricopeptide_rpt	Pfam	184	213
IPR002885	Pentatricopeptide_rpt	Pfam	257	281
IPR002885	Pentatricopeptide_rpt	Pfam	285	313
IPR011990	TPR-like_helical_dom_sf	Gene3D	143	231
IPR002885	Pentatricopeptide_rpt	Pfam	384	430
IPR002885	Pentatricopeptide_rpt	Pfam	78	126
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	182	216
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	521	555

No CAZYmes available for this sequence

External Links

No external refs found!