Sobic.001G327500.2

Description : uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)

Gene families : OG_01_0001842 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001842_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G327500.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G327500.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_177
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_70

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006206	pyrimidine nucleobase metabolic process	None	Extended
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009112	nucleobase metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046112	nucleobase biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011060	RibuloseP-bd_barrel	SUPERFAMILY	186	278
IPR029057	PRTase-like	SUPERFAMILY	48	181
IPR001754	OMPdeCOase_dom	Pfam	230	270
IPR029057	PRTase-like	Gene3D	23	192
IPR000836	PRibTrfase_dom	CDD	52	157
IPR013785	Aldolase_TIM	Gene3D	201	278

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G327500.2

Expression Profile

Co-expression Networks

Functional Annotation