Sobic.001G333500.1

Description : casein lytic proteinase B3

Gene families : OG_01_0003347 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003347_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G333500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G333500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_123
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_146

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006457	protein folding	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	ISM	GOs from InterProScan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042026	protein refolding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019489	Clp_ATPase_C	Pfam	864	943
IPR027417	P-loop_NTPase	Gene3D	238	431
IPR001270	ClpA/B	PRINTS	768	786
IPR001270	ClpA/B	PRINTS	801	815
IPR001270	ClpA/B	PRINTS	739	757
IPR001270	ClpA/B	PRINTS	694	712
IPR003959	ATPase_AAA_core	Pfam	292	424
IPR003593	AAA+_ATPase	SMART	287	431
IPR003593	AAA+_ATPase	SMART	690	865
IPR028299	ClpA/B_CS2	ProSitePatterns	724	742
IPR036628	Clp_N_dom_sf	Gene3D	91	237
IPR003959	ATPase_AAA_core	Pfam	689	857
IPR027417	P-loop_NTPase	SUPERFAMILY	248	638
IPR018368	ClpA/B_CS1	ProSitePatterns	383	395
IPR017730	Chaperonin_ClpB	TIGRFAM	95	947
IPR027417	P-loop_NTPase	Gene3D	432	637
IPR019489	Clp_ATPase_C	SMART	864	958
IPR036628	Clp_N_dom_sf	SUPERFAMILY	94	245
IPR004176	Clp_R_dom	Pfam	108	157
IPR004176	Clp_R_dom	Pfam	183	234
IPR027417	P-loop_NTPase	Gene3D	642	862
IPR041546	ClpA/ClpB_AAA_lid	Pfam	431	533
IPR004176	Clp_R_dom	ProSiteProfiles	91	235
IPR027417	P-loop_NTPase	SUPERFAMILY	639	943

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G333500.1

Expression Profile

Co-expression Networks

Functional Annotation