Sobic.001G356400.1

Description : expansin A1

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G356400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G356400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_346
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_90

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007117	Expansin_CBD	Pfam	163	246
IPR007118	Expan_Lol_pI	PRINTS	28	43
IPR007118	Expan_Lol_pI	PRINTS	204	218
IPR007118	Expan_Lol_pI	PRINTS	145	161
IPR007118	Expan_Lol_pI	PRINTS	46	64
IPR007118	Expan_Lol_pI	PRINTS	68	86
IPR007118	Expan_Lol_pI	PRINTS	243	257
IPR036749	Expansin_CBD_sf	SUPERFAMILY	159	257
IPR002963	Expansin	PANTHER	2	261
IPR036908	RlpA-like_sf	SUPERFAMILY	28	180
IPR009009	RlpA-like_DPBB	Pfam	64	152
IPR007117	Expansin_CBD	ProSiteProfiles	172	257
IPR036749	Expansin_CBD_sf	Gene3D	162	260
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	47	162
IPR036908	RlpA-like_sf	Gene3D	14	158
IPR002963	Expansin	PRINTS	120	137
IPR002963	Expansin	PRINTS	137	150
IPR002963	Expansin	PRINTS	173	194
IPR002963	Expansin	PRINTS	59	73
IPR002963	Expansin	PRINTS	161	173
IPR002963	Expansin	PRINTS	101	111
IPR007112	Expansin/allergen_DPBB_dom	SMART	64	152

No CAZYmes available for this sequence

External Links

No external refs found!