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  5. Sobic.001G356500.1

Sobic.001G356500.1


Description : polypyrimidine tract-binding protein 1


Gene families : OG_01_0012121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012121_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G356500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G356500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_213
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_188


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 251 342
IPR000504 RRM_dom ProSiteProfiles 19 97
IPR035979 RBD_domain_sf SUPERFAMILY 5 107
IPR034794 PTBPH1/PTBPH2_RRM3 CDD 244 340
IPR000504 RRM_dom Pfam 23 73
IPR021790 PTBP1-like_RRM2 Pfam 243 322
IPR035979 RBD_domain_sf SUPERFAMILY 124 215
IPR034792 PTBPH1/PTBPH2_RRM1 CDD 17 97
IPR000504 RRM_dom SMART 20 93
IPR000504 RRM_dom SMART 248 318
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 9 112
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 113 222
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 243 346

No CAZYmes available for this sequence

No external refs found!