1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G362400.2

Sobic.001G362400.2


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0018476 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018476_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G362400.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G362400.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_326
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 387 421
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 317 351
IPR002885 Pentatricopeptide_rpt Pfam 352 400
IPR002885 Pentatricopeptide_rpt Pfam 284 325
IPR011990 TPR-like_helical_dom_sf Gene3D 122 262
IPR011990 TPR-like_helical_dom_sf Gene3D 263 369
IPR002885 Pentatricopeptide_rpt Pfam 249 278
IPR011990 TPR-like_helical_dom_sf Gene3D 370 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 282 316
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281
IPR002885 Pentatricopeptide_rpt TIGRFAM 319 350
IPR002885 Pentatricopeptide_rpt TIGRFAM 354 387
IPR002885 Pentatricopeptide_rpt TIGRFAM 219 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 249 282
IPR002885 Pentatricopeptide_rpt TIGRFAM 425 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 285 318
IPR002885 Pentatricopeptide_rpt TIGRFAM 389 422
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 352 386
IPR002885 Pentatricopeptide_rpt Pfam 418 450
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 422 456

No CAZYmes available for this sequence

No external refs found!