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  5. Sobic.001G370300.1

Sobic.001G370300.1


Description : WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related


Gene families : OG_01_0007742 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007742_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G370300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G370300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_332
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_13


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR020472 G-protein_beta_WD-40_rep PRINTS 325 339
IPR020472 G-protein_beta_WD-40_rep PRINTS 284 298
IPR020472 G-protein_beta_WD-40_rep PRINTS 409 423
IPR001680 WD40_rpt SMART 299 338
IPR001680 WD40_rpt SMART 258 297
IPR001680 WD40_rpt SMART 383 422
IPR001680 WD40_rpt SMART 214 255
IPR001680 WD40_rpt SMART 425 465
IPR001680 WD40_rpt SMART 341 380
IPR001680 WD40_rpt SMART 468 507
IPR019775 WD40_repeat_CS ProSitePatterns 367 381
IPR001680 WD40_rpt ProSiteProfiles 223 264
IPR001680 WD40_rpt ProSiteProfiles 306 347
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 210 302
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 303 428
IPR001680 WD40_rpt ProSiteProfiles 265 297
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 221 506
IPR036285 PRP4-like_sf SUPERFAMILY 74 127
IPR001680 WD40_rpt ProSiteProfiles 475 516
IPR001680 WD40_rpt ProSiteProfiles 348 389
IPR001680 WD40_rpt Pfam 261 297
IPR001680 WD40_rpt Pfam 388 422
IPR001680 WD40_rpt Pfam 301 338
IPR001680 WD40_rpt Pfam 349 380
IPR001680 WD40_rpt Pfam 470 507
IPR001680 WD40_rpt Pfam 230 255
IPR019775 WD40_repeat_CS ProSitePatterns 409 423
IPR001680 WD40_rpt ProSiteProfiles 390 431
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 429 520
IPR036285 PRP4-like_sf Gene3D 64 135
IPR014906 PRP4-like Pfam 95 123
IPR014906 PRP4-like SMART 90 143
IPR001680 WD40_rpt ProSiteProfiles 432 474
IPR019775 WD40_repeat_CS ProSitePatterns 325 339

No CAZYmes available for this sequence

No external refs found!