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  5. Sobic.001G416900.1

Sobic.001G416900.1


Description : histone H2A 12


Gene families : OG_01_0000335 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000335_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G416900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G416900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_181
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_147


Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISM GOs from InterProScan
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0046982 protein heterodimerization activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR009072 Histone-fold Gene3D 15 157
IPR002119 Histone_H2A PRINTS 57 72
IPR002119 Histone_H2A PRINTS 72 85
IPR002119 Histone_H2A PRINTS 86 100
IPR002119 Histone_H2A PRINTS 114 132
IPR002119 Histone_H2A PRINTS 28 50
IPR002119 Histone_H2A PANTHER 10 156
IPR009072 Histone-fold SUPERFAMILY 11 112
IPR002119 Histone_H2A SMART 17 137
IPR007125 Histone_H2A/H2B/H3 Pfam 26 103
IPR002119 Histone_H2A CDD 25 134
IPR032458 Histone_H2A_CS ProSitePatterns 36 42
IPR032454 Histone_H2A_C Pfam 106 139

No CAZYmes available for this sequence

No external refs found!