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  5. Sobic.001G423200.1

Sobic.001G423200.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0022400 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0022400_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G423200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G423200.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_313


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 8 254
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 149 183
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 322 357
IPR011990 TPR-like_helical_dom_sf Gene3D 258 469
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 114 148
IPR002885 Pentatricopeptide_rpt TIGRFAM 325 357
IPR002885 Pentatricopeptide_rpt TIGRFAM 289 322
IPR002885 Pentatricopeptide_rpt TIGRFAM 152 185
IPR002885 Pentatricopeptide_rpt Pfam 287 333
IPR002885 Pentatricopeptide_rpt Pfam 148 194
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 82 112
IPR002885 Pentatricopeptide_rpt Pfam 87 112
IPR002885 Pentatricopeptide_rpt Pfam 261 286
IPR002885 Pentatricopeptide_rpt Pfam 116 143

No CAZYmes available for this sequence

No external refs found!