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Description : Calcium-binding tetratricopeptide family protein
Gene families : OG_01_0015610 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015610_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G428000.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G428000.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_329 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_205 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005509 | calcium ion binding | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000433 | Znf_ZZ | SMART | 767 | 810 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 258 | 342 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 413 | 446 |
| IPR002048 | EF_hand_dom | ProSiteProfiles | 14 | 49 |
| IPR011992 | EF-hand-dom_pair | SUPERFAMILY | 13 | 64 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 379 | 412 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 447 | 480 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 275 | 510 |
| IPR002048 | EF_hand_dom | SMART | 18 | 46 |
| IPR019734 | TPR_repeat | SMART | 481 | 514 |
| IPR019734 | TPR_repeat | SMART | 379 | 412 |
| IPR019734 | TPR_repeat | SMART | 345 | 378 |
| IPR019734 | TPR_repeat | SMART | 447 | 480 |
| IPR019734 | TPR_repeat | SMART | 269 | 302 |
| IPR019734 | TPR_repeat | SMART | 303 | 336 |
| IPR019734 | TPR_repeat | SMART | 413 | 446 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 343 | 546 |
| IPR011992 | EF-hand-dom_pair | SUPERFAMILY | 634 | 744 |
| IPR043145 | Znf_ZZ_sf | Gene3D | 761 | 818 |
No CAZYmes available for this sequence
| No external refs found! |