- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0011382 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011382_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G436600.3 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G436600.3 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_156 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 231 | 265 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 332 | 366 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 132 | 161 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 334 | 361 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 233 | 266 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 470 | 504 |
| IPR032867 | DYW_dom | Pfam | 508 | 629 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 300 | 517 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 57 | 180 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 130 | 493 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 408 | 432 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 476 | 502 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 233 | 263 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 207 | 225 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 103 | 128 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 129 | 177 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 334 | 379 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 129 | 163 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 181 | 285 |
No CAZYmes available for this sequence
| No external refs found! |