Sobic.001G437801.1

Description : TCP-1/cpn60 chaperonin family protein

Gene families : OG_01_0003082 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003082_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G437801.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G437801.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_193
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_192

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0006457	protein folding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042026	protein refolding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027413	GROEL-like_equatorial_sf	SUPERFAMILY	546	1061
IPR001844	Cpn60/GroEL	CDD	539	1063
IPR001844	Cpn60/GroEL	PRINTS	934	955
IPR001844	Cpn60/GroEL	PRINTS	620	647
IPR001844	Cpn60/GroEL	PRINTS	886	911
IPR001844	Cpn60/GroEL	PRINTS	564	590
IPR001844	Cpn60/GroEL	PRINTS	804	827
IPR027409	GroEL-like_apical_dom_sf	SUPERFAMILY	720	911
IPR027410	TCP-1-like_intermed_sf	Gene3D	674	946
IPR027410	TCP-1-like_intermed_sf	SUPERFAMILY	678	739
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	46	368
IPR027413	GROEL-like_equatorial_sf	Gene3D	548	1062
IPR000490	Glyco_hydro_17	Pfam	46	369
IPR018370	Chaperonin_Cpn60_CS	ProSitePatterns	941	952
IPR001844	Cpn60/GroEL	TIGRFAM	539	1066
IPR027409	GroEL-like_apical_dom_sf	Gene3D	728	909
IPR002423	Cpn60/GroEL/TCP-1	Pfam	560	1063

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH17	311	1095	1.5e-107	46	369

External Links

No external refs found!

Sobic.001G437801.1

Expression Profile

Co-expression Networks

Functional Annotation