Sobic.001G455800.1

Description : methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative

Gene families : OG_01_0001484 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001484_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G455800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G455800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_108

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	ISM	GOs from InterProScan
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004825	methionine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006431	methionyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001412	aa-tRNA-synth_I_CS	ProSitePatterns	24	35
IPR029038	MetRS_Zn	SUPERFAMILY	152	187
IPR033911	MetRS_core	CDD	16	385
IPR033911	MetRS_core	PRINTS	19	32
IPR033911	MetRS_core	PRINTS	302	317
IPR033911	MetRS_core	PRINTS	397	408
IPR033911	MetRS_core	PRINTS	100	111
IPR033911	MetRS_core	PRINTS	267	278
IPR033911	MetRS_core	PRINTS	52	66
IPR002547	tRNA-bd_dom	Pfam	643	737
IPR014758	Met-tRNA_synth	TIGRFAM	17	550
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	16	398
IPR012340	NA-bd_OB-fold	SUPERFAMILY	637	798
IPR015413	Methionyl/Leucyl_tRNA_Synth	Pfam	17	410
IPR041872	Anticodon_Met	Pfam	435	586
IPR029038	MetRS_Zn	Gene3D	152	187
IPR023458	Met-tRNA_ligase_1	PANTHER	2	799
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	402	582
IPR041872	Anticodon_Met	CDD	394	527
IPR023458	Met-tRNA_ligase_1	Hamap	15	581
IPR002547	tRNA-bd_dom	ProSiteProfiles	637	740

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G455800.1

Expression Profile

Co-expression Networks

Functional Annotation