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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0011822 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011822_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G460200.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G460200.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_68 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 172 | 229 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 255 | 303 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 467 | 513 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 360 | 408 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 434 | 580 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 432 | 466 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 361 | 395 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 341 | 432 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 467 | 501 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 133 | 218 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 184 | 218 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 221 | 340 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 294 | 326 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 535 | 567 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 364 | 396 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 187 | 216 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 469 | 503 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 332 | 361 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 258 | 288 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 326 | 360 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 532 | 566 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 149 | 183 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 436 | 463 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 535 | 564 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 332 | 357 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 256 | 290 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 291 | 325 |
No CAZYmes available for this sequence
| No external refs found! |