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  5. Sobic.001G466500.1

Sobic.001G466500.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0013771 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013771_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G466500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G466500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_326
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_129


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 138 291
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 490 524
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 736 770
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 244 278
IPR011990 TPR-like_helical_dom_sf Gene3D 732 792
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 560 594
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 243
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 595 629
IPR002885 Pentatricopeptide_rpt Pfam 747 767
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 665 699
IPR002885 Pentatricopeptide_rpt TIGRFAM 527 560
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 491
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 314
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 383
IPR002885 Pentatricopeptide_rpt TIGRFAM 387 421
IPR002885 Pentatricopeptide_rpt TIGRFAM 246 279
IPR002885 Pentatricopeptide_rpt TIGRFAM 317 350
IPR002885 Pentatricopeptide_rpt TIGRFAM 422 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 632 666
IPR002885 Pentatricopeptide_rpt TIGRFAM 740 771
IPR002885 Pentatricopeptide_rpt TIGRFAM 597 630
IPR002885 Pentatricopeptide_rpt TIGRFAM 563 596
IPR002885 Pentatricopeptide_rpt TIGRFAM 492 525
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 630 664
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 279 313
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR011990 TPR-like_helical_dom_sf Gene3D 294 406
IPR002885 Pentatricopeptide_rpt Pfam 593 621
IPR002885 Pentatricopeptide_rpt Pfam 310 342
IPR002885 Pentatricopeptide_rpt Pfam 555 587
IPR002885 Pentatricopeptide_rpt Pfam 243 292
IPR002885 Pentatricopeptide_rpt Pfam 630 676
IPR002885 Pentatricopeptide_rpt Pfam 349 398
IPR002885 Pentatricopeptide_rpt Pfam 419 468
IPR002885 Pentatricopeptide_rpt Pfam 489 538
IPR011990 TPR-like_helical_dom_sf Gene3D 624 696
IPR011990 TPR-like_helical_dom_sf Gene3D 551 623
IPR011990 TPR-like_helical_dom_sf Gene3D 483 550
IPR011990 TPR-like_helical_dom_sf Gene3D 407 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 525 559

No CAZYmes available for this sequence

No external refs found!