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  5. Sobic.001G479900.1

Sobic.001G479900.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011142 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011142_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G479900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G479900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_771


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 407 453
IPR002885 Pentatricopeptide_rpt Pfam 807 855
IPR002885 Pentatricopeptide_rpt Pfam 304 350
IPR045215 PPR_prot_At1g15510 PANTHER 659 786
IPR045215 PPR_prot_At1g15510 PANTHER 56 335
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 407 441
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 204 238
IPR024461 CCDC90-like Pfam 983 1044
IPR045215 PPR_prot_At1g15510 PANTHER 788 985
IPR008545 Web Pfam 1322 1873
IPR045215 PPR_prot_At1g15510 PANTHER 336 435
IPR011990 TPR-like_helical_dom_sf Gene3D 362 468
IPR011990 TPR-like_helical_dom_sf Gene3D 563 661
IPR011990 TPR-like_helical_dom_sf Gene3D 662 784
IPR011990 TPR-like_helical_dom_sf Gene3D 262 355
IPR002885 Pentatricopeptide_rpt TIGRFAM 611 644
IPR002885 Pentatricopeptide_rpt TIGRFAM 709 743
IPR002885 Pentatricopeptide_rpt TIGRFAM 307 340
IPR002885 Pentatricopeptide_rpt TIGRFAM 510 535
IPR002885 Pentatricopeptide_rpt TIGRFAM 410 443
IPR002885 Pentatricopeptide_rpt TIGRFAM 810 843
IPR002885 Pentatricopeptide_rpt TIGRFAM 206 240
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 808 842
IPR002885 Pentatricopeptide_rpt Pfam 611 639
IPR002885 Pentatricopeptide_rpt Pfam 510 536
IPR002885 Pentatricopeptide_rpt Pfam 178 203
IPR002885 Pentatricopeptide_rpt Pfam 206 235
IPR002885 Pentatricopeptide_rpt Pfam 710 735
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 609 643
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 305 339
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 707 741
IPR045215 PPR_prot_At1g15510 PANTHER 592 657
IPR045215 PPR_prot_At1g15510 PANTHER 432 594
IPR011990 TPR-like_helical_dom_sf Gene3D 131 261
IPR011990 TPR-like_helical_dom_sf Gene3D 785 1039

No CAZYmes available for this sequence

No external refs found!