Sobic.001G494300.2

Description : topoisomerase 3alpha

Gene families : OG_01_0012444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012444_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G494300.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G494300.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_13
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_188

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	ISM	GOs from InterProScan
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013497	Topo_IA_cen	PRINTS	172	185
IPR013497	Topo_IA_cen	PRINTS	472	488
IPR013497	Topo_IA_cen	PRINTS	390	399
IPR013497	Topo_IA_cen	PRINTS	272	290
IPR013497	Topo_IA_cen	PRINTS	570	584
IPR013826	Topo_IA_cen_sub3	Gene3D	356	486
IPR006171	TOPRIM_domain	ProSiteProfiles	64	208
IPR013824	Topo_IA_cen_sub1	Gene3D	232	656
IPR010666	Znf_GRF	Pfam	855	895
IPR034144	TOPRIM_TopoIII	CDD	64	222
IPR023405	Topo_IA_core_domain	SUPERFAMILY	65	655
IPR013497	Topo_IA_cen	Pfam	226	645
IPR006171	TOPRIM_domain	Pfam	66	209
IPR000380	Topo_IA	PANTHER	64	756
IPR001878	Znf_CCHC	ProSiteProfiles	950	965
IPR023406	Topo_IA_AS	ProSitePatterns	385	399
IPR006171	TOPRIM_domain	SMART	64	198
IPR013825	Topo_IA_cen_sub2	Gene3D	296	554
IPR003601	Topo_IA_2	SMART	201	302
IPR003602	Topo_IA_DNA-bd_dom	SMART	348	608
IPR013497	Topo_IA_cen	CDD	229	656
IPR013498	Topo_IA_Znf	Pfam	692	729

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G494300.2

Expression Profile

Co-expression Networks

Functional Annotation