Sobic.001G508000.1

Description : ATPase, AAA-type, CDC48 protein

Gene families : OG_01_0002803 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002803_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G508000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G508000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_31
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_28

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	ISM	GOs from InterProScan
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003338	CDC4_N-term_subdom	Pfam	8	88
IPR003959	ATPase_AAA_core	Pfam	223	352
IPR003959	ATPase_AAA_core	Pfam	496	629
IPR027417	P-loop_NTPase	Gene3D	446	629
IPR005938	AAA_ATPase_CDC48	TIGRFAM	7	746
IPR029067	CDC48_domain_2-like_sf	SUPERFAMILY	90	182
IPR009010	Asp_de-COase-like_dom_sf	SUPERFAMILY	5	87
IPR004201	Cdc48_dom2	SMART	107	174
IPR003960	ATPase_AAA_CS	ProSitePatterns	323	341
IPR003593	AAA+_ATPase	SMART	492	631
IPR003593	AAA+_ATPase	SMART	219	355
IPR041569	AAA_lid_3	Pfam	375	416
IPR041569	AAA_lid_3	Pfam	651	691
IPR027417	P-loop_NTPase	Gene3D	188	352
IPR027417	P-loop_NTPase	SUPERFAMILY	454	742
IPR003960	ATPase_AAA_CS	ProSitePatterns	599	617
IPR003338	CDC4_N-term_subdom	SMART	7	90
IPR004201	Cdc48_dom2	Pfam	108	173
IPR027417	P-loop_NTPase	SUPERFAMILY	184	444

No CAZYmes available for this sequence

External Links

No external refs found!