Sobic.001G509700.2

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0011401 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011401_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G509700.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G509700.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_168
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_37

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	TIGRFAM	269	302
IPR002885	Pentatricopeptide_rpt	Pfam	167	194
IPR002885	Pentatricopeptide_rpt	Pfam	373	399
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	267	301
IPR002885	Pentatricopeptide_rpt	Pfam	267	314
IPR011990	TPR-like_helical_dom_sf	Gene3D	263	495
IPR011990	TPR-like_helical_dom_sf	Gene3D	58	221
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	165	199
IPR032867	DYW_dom	Pfam	441	552

No CAZYmes available for this sequence

External Links

No external refs found!