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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0011073 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011073_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G513000.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G513000.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_172 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 84 | 118 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 488 | 535 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 287 | 334 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 187 | 213 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 630 | 658 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 157 | 185 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 390 | 416 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 88 | 115 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 261 | 284 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 384 | 645 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 340 | 455 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 231 | 339 |
| IPR032867 | DYW_dom | Pfam | 665 | 784 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 462 | 676 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 144 | 230 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 58 | 143 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 489 | 523 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 289 | 320 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 156 | 187 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 187 | 212 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 491 | 525 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 626 | 660 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 154 | 188 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 287 | 321 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 388 | 422 |
No CAZYmes available for this sequence
| No external refs found! |