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  5. Sobic.001G519900.1

Sobic.001G519900.1


Description : ribonuclease II family protein


Gene families : OG_01_0001430 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001430_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G519900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G519900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0004540 RNA nuclease activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002716 PIN_dom Pfam 55 178
IPR033770 RRP44_S1 Pfam 852 919
IPR001900 RNase_II/R Pfam 471 800
IPR002716 PIN_dom SMART 53 166
IPR029060 PIN-like_dom_sf SUPERFAMILY 55 186
IPR012340 NA-bd_OB-fold SUPERFAMILY 341 444
IPR012340 NA-bd_OB-fold SUPERFAMILY 851 930
IPR012340 NA-bd_OB-fold SUPERFAMILY 429 847
IPR022966 RNase_II/R_CS ProSitePatterns 769 793
IPR012340 NA-bd_OB-fold SUPERFAMILY 216 349
IPR001900 RNase_II/R SMART 471 802
IPR041505 Dis3_CSD2 Pfam 373 440
IPR033771 Rrp44_CSD1 Pfam 220 330

No CAZYmes available for this sequence

No external refs found!