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  5. Sobic.002G002200.1

Sobic.002G002200.1


Description : RNA-binding protein 45A


Gene families : OG_01_0011346 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011346_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G002200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G002200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_117
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_120


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 151 230
IPR035979 RBD_domain_sf SUPERFAMILY 14 121
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 124 226
IPR000504 RRM_dom SMART 152 226
IPR000504 RRM_dom SMART 250 317
IPR000504 RRM_dom SMART 37 110
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 229 357
IPR000504 RRM_dom Pfam 251 315
IPR000504 RRM_dom Pfam 38 105
IPR000504 RRM_dom Pfam 153 221
IPR000504 RRM_dom ProSiteProfiles 249 321
IPR035979 RBD_domain_sf SUPERFAMILY 151 322
IPR000504 RRM_dom ProSiteProfiles 36 116
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 36 115

No CAZYmes available for this sequence

No external refs found!