Sobic.002G008900.1

Description : PHD finger family protein

Gene families : OG_01_0002483 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002483_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G008900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G008900.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	ISM	GOs from InterProScan
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034502	protein localization to chromosome	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061780	mitotic cohesin loading	ISM	GOs from InterProScan
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071168	protein localization to chromatin	None	Extended
BP	GO:0071921	cohesin loading	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR024986	Nipped-B_C	Pfam	1351	1535
IPR011989	ARM-like	Gene3D	817	1018
IPR011011	Znf_FYVE_PHD	SUPERFAMILY	666	719
IPR016024	ARM-type_fold	SUPERFAMILY	612	1535
IPR026003	Cohesin_HEAT	Pfam	860	901
IPR033031	Scc2/Nipped-B	PANTHER	24	1782

No CAZYmes available for this sequence

External Links

No external refs found!