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  5. Sobic.002G043800.1

Sobic.002G043800.1


Description : ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0003570 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003570_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G043800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G043800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_54
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000408 Reg_chr_condens ProSiteProfiles 262 312
IPR000408 Reg_chr_condens PRINTS 153 169
IPR000408 Reg_chr_condens PRINTS 299 315
IPR000408 Reg_chr_condens PRINTS 315 329
IPR000408 Reg_chr_condens PRINTS 412 430
IPR000408 Reg_chr_condens PRINTS 206 222
IPR000408 Reg_chr_condens PRINTS 262 278
IPR000408 Reg_chr_condens PRINTS 187 200
IPR002110 Ankyrin_rpt Pfam 46 125
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 33 134
IPR000408 Reg_chr_condens ProSiteProfiles 152 203
IPR009091 RCC1/BLIP-II SUPERFAMILY 117 428
IPR002110 Ankyrin_rpt SMART 94 123
IPR002110 Ankyrin_rpt SMART 60 89
IPR000408 Reg_chr_condens ProSiteProfiles 367 422
IPR000408 Reg_chr_condens ProSiteProfiles 313 366
IPR009091 RCC1/BLIP-II SUPERFAMILY 404 504
IPR000408 Reg_chr_condens ProSiteProfiles 204 261
IPR009091 RCC1/BLIP-II Gene3D 148 382
IPR009091 RCC1/BLIP-II Gene3D 383 531
IPR002110 Ankyrin_rpt ProSiteProfiles 60 92
IPR036770 Ankyrin_rpt-contain_sf Gene3D 24 143
IPR002110 Ankyrin_rpt ProSiteProfiles 94 126
IPR000408 Reg_chr_condens Pfam 313 363
IPR000408 Reg_chr_condens Pfam 203 256
IPR000408 Reg_chr_condens Pfam 153 200
IPR000408 Reg_chr_condens Pfam 262 309

No CAZYmes available for this sequence

No external refs found!