- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0010048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010048_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G048200.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G048200.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 393 | 502 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 145 | 247 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 547 | 594 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 299 | 344 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 197 | 242 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 47 | 144 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 503 | 743 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 251 | 390 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 521 | 546 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 79 | 103 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 447 | 473 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 74 | 108 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 300 | 334 |
| IPR032867 | DYW_dom | Pfam | 726 | 833 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 197 | 231 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 547 | 581 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 200 | 228 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 302 | 333 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 171 | 198 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 79 | 104 |
No CAZYmes available for this sequence
| No external refs found! |