1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G053200.3

Sobic.002G053200.3


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0038049 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0038049_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G053200.3
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G053200.3
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_198


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 356 440
IPR035979 RBD_domain_sf SUPERFAMILY 363 528
IPR000504 RRM_dom ProSiteProfiles 267 366
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 230 333
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 598 640
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 441 564
IPR000504 RRM_dom Pfam 455 522
IPR000504 RRM_dom Pfam 269 327
IPR000504 RRM_dom ProSiteProfiles 357 441
IPR035979 RBD_domain_sf SUPERFAMILY 264 328
IPR000504 RRM_dom SMART 454 529
IPR000504 RRM_dom SMART 268 336
IPR000504 RRM_dom SMART 358 435
IPR000504 RRM_dom ProSiteProfiles 453 533
IPR016197 Chromo-like_dom_sf SUPERFAMILY 593 642

No CAZYmes available for this sequence

No external refs found!