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  5. Sobic.002G055300.1

Sobic.002G055300.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0013131 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013131_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G055300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G055300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_139
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_95


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt TIGRFAM 318 351
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 490
IPR002885 Pentatricopeptide_rpt TIGRFAM 424 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 216 249
IPR002885 Pentatricopeptide_rpt TIGRFAM 527 560
IPR002885 Pentatricopeptide_rpt TIGRFAM 492 526
IPR002885 Pentatricopeptide_rpt TIGRFAM 147 179
IPR002885 Pentatricopeptide_rpt TIGRFAM 597 631
IPR002885 Pentatricopeptide_rpt TIGRFAM 562 596
IPR002885 Pentatricopeptide_rpt TIGRFAM 182 215
IPR002885 Pentatricopeptide_rpt TIGRFAM 252 284
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 386
IPR002885 Pentatricopeptide_rpt TIGRFAM 632 666
IPR002885 Pentatricopeptide_rpt TIGRFAM 387 420
IPR011990 TPR-like_helical_dom_sf Gene3D 312 414
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 214 248
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 348 617
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 630 664
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 525 559
IPR002885 Pentatricopeptide_rpt Pfam 317 347
IPR002885 Pentatricopeptide_rpt Pfam 216 246
IPR002885 Pentatricopeptide_rpt Pfam 147 175
IPR002885 Pentatricopeptide_rpt Pfam 182 211
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 595 629
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 560 594
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 179 213
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 144 178
IPR011990 TPR-like_helical_dom_sf Gene3D 243 311
IPR011990 TPR-like_helical_dom_sf Gene3D 415 482
IPR011990 TPR-like_helical_dom_sf Gene3D 623 680
IPR011990 TPR-like_helical_dom_sf Gene3D 483 553
IPR011990 TPR-like_helical_dom_sf Gene3D 554 622
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 249 283
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 490 524
IPR002885 Pentatricopeptide_rpt Pfam 349 398
IPR002885 Pentatricopeptide_rpt Pfam 249 297
IPR002885 Pentatricopeptide_rpt Pfam 559 608
IPR002885 Pentatricopeptide_rpt Pfam 492 538
IPR002885 Pentatricopeptide_rpt Pfam 629 676
IPR002885 Pentatricopeptide_rpt Pfam 420 468
IPR011990 TPR-like_helical_dom_sf Gene3D 71 234
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384

No CAZYmes available for this sequence

No external refs found!