Sobic.002G064500.1

Description : Deoxyxylulose-5-phosphate synthase

Gene families : OG_01_0005916 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005916_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G064500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G064500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016744	transketolase or transaldolase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005477	Dxylulose-5-P_synthase	CDD	124	379
IPR029061	THDP-binding	SUPERFAMILY	85	472
IPR005477	Dxylulose-5-P_synthase	Hamap	87	721
IPR005477	Dxylulose-5-P_synthase	Pfam	88	373
IPR005475	Transketolase-like_Pyr-bd	SMART	410	575
IPR005477	Dxylulose-5-P_synthase	TIGRFAM	90	720
IPR005477	Dxylulose-5-P_synthase	PANTHER	3	730
IPR005475	Transketolase-like_Pyr-bd	Pfam	410	571
IPR009014	Transketo_C/PFOR_II	SUPERFAMILY	584	720
IPR029061	THDP-binding	SUPERFAMILY	407	597
IPR033248	Transketolase_C	Pfam	589	712
IPR005474	Transketolase_N	ProSitePatterns	113	132
IPR020826	Transketolase_BS	ProSitePatterns	516	532
IPR009014	Transketo_C/PFOR_II	Gene3D	589	720

No CAZYmes available for this sequence

External Links

No external refs found!