Sobic.002G071400.1

Description : RNA binding;RNA binding

Gene families : OG_01_0001481 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001481_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G071400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G071400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003029	S1_domain	ProSiteProfiles	145	229
IPR012340	NA-bd_OB-fold	SUPERFAMILY	575	662
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	1620	1725
IPR012340	NA-bd_OB-fold	SUPERFAMILY	137	230
IPR003107	HAT	SMART	1709	1740
IPR003107	HAT	SMART	1668	1705
IPR003107	HAT	SMART	1634	1666
IPR003107	HAT	SMART	1742	1774
IPR003107	HAT	SMART	1847	1882
IPR003107	HAT	SMART	1813	1845
IPR012340	NA-bd_OB-fold	SUPERFAMILY	492	587
IPR003029	S1_domain	ProSiteProfiles	331	401
IPR012340	NA-bd_OB-fold	SUPERFAMILY	323	406
IPR003029	S1_domain	Pfam	422	482
IPR003029	S1_domain	Pfam	593	661
IPR003029	S1_domain	Pfam	504	568
IPR003029	S1_domain	Pfam	1450	1521
IPR012340	NA-bd_OB-fold	SUPERFAMILY	749	843
IPR003029	S1_domain	ProSiteProfiles	678	748
IPR003029	S1_domain	ProSiteProfiles	1059	1135
IPR003029	S1_domain	ProSiteProfiles	417	489
IPR045209	Rrp5	PANTHER	49	1905
IPR003029	S1_domain	ProSiteProfiles	1361	1430
IPR011990	TPR-like_helical_dom_sf	Gene3D	1694	1909
IPR003029	S1_domain	ProSiteProfiles	1254	1328
IPR012340	NA-bd_OB-fold	SUPERFAMILY	225	315
IPR003029	S1_domain	ProSiteProfiles	876	938
IPR003029	S1_domain	ProSiteProfiles	594	663
IPR003029	S1_domain	ProSiteProfiles	1451	1521
IPR003029	S1_domain	ProSiteProfiles	506	574
IPR003029	S1_domain	ProSiteProfiles	1157	1228
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	1687	1902
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1156	1225
IPR008847	Suf	Pfam	1805	1903
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1240	1330
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1443	1532
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1050	1147
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1351	1435
IPR003029	S1_domain	ProSiteProfiles	768	837

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.002G071400.1

Expression Profile

Co-expression Networks

Functional Annotation