Sobic.002G084400.1

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_01_0018339 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018339_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G084400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G084400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	415	449
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	159	340
IPR002885	Pentatricopeptide_rpt	Pfam	414	462
IPR002885	Pentatricopeptide_rpt	Pfam	210	253
IPR045215	PPR_prot_At1g15510	PANTHER	33	702
IPR011990	TPR-like_helical_dom_sf	Gene3D	28	178
IPR002885	Pentatricopeptide_rpt	TIGRFAM	213	243
IPR002885	Pentatricopeptide_rpt	TIGRFAM	182	207
IPR002885	Pentatricopeptide_rpt	TIGRFAM	418	451
IPR002885	Pentatricopeptide_rpt	TIGRFAM	286	308
IPR002885	Pentatricopeptide_rpt	TIGRFAM	317	346
IPR002885	Pentatricopeptide_rpt	TIGRFAM	454	486
IPR002885	Pentatricopeptide_rpt	TIGRFAM	79	105
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	148	182
IPR011990	TPR-like_helical_dom_sf	Gene3D	256	390
IPR011990	TPR-like_helical_dom_sf	Gene3D	391	617
IPR011990	TPR-like_helical_dom_sf	Gene3D	179	255
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	314	348
IPR002885	Pentatricopeptide_rpt	Pfam	182	205
IPR002885	Pentatricopeptide_rpt	Pfam	489	512
IPR002885	Pentatricopeptide_rpt	Pfam	79	104
IPR002885	Pentatricopeptide_rpt	Pfam	317	346
IPR002885	Pentatricopeptide_rpt	Pfam	286	307
IPR032867	DYW_dom	Pfam	588	712
IPR002885	Pentatricopeptide_rpt	Pfam	142	178
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	76	106
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	210	244

No CAZYmes available for this sequence

External Links

No external refs found!