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  5. Sobic.002G090500.1

Sobic.002G090500.1


Description : calreticulin 1a


Gene families : OG_01_0000638 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000638_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G090500.1 No neighbors in network
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G090500.1
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_153


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005783 endoplasmic reticulum ISM GOs from InterProScan
BP GO:0006457 protein folding ISM GOs from InterProScan
MF GO:0051082 unfolded protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018124 Calret/calnex_CS ProSitePatterns 249 261
IPR013320 ConA-like_dom_sf SUPERFAMILY 24 224
IPR001580 Calret/calnex Pfam 29 264
IPR001580 Calret/calnex Pfam 266 339
IPR018124 Calret/calnex_CS ProSitePatterns 136 144
IPR009033 Calreticulin/calnexin_P_dom_sf Gene3D 211 312
IPR009169 Calreticulin PIRSF 7 421
IPR001580 Calret/calnex PRINTS 106 124
IPR001580 Calret/calnex PRINTS 287 306
IPR001580 Calret/calnex PRINTS 249 271
IPR001580 Calret/calnex PRINTS 221 234
IPR001580 Calret/calnex PRINTS 132 148
IPR001580 Calret/calnex PRINTS 320 340
IPR001580 Calret/calnex PANTHER 11 407
IPR009033 Calreticulin/calnexin_P_dom_sf SUPERFAMILY 207 322
IPR018124 Calret/calnex_CS ProSitePatterns 104 119

No CAZYmes available for this sequence

No external refs found!