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  5. Sobic.002G092050.1

Sobic.002G092050.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010728 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010728_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G092050.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G092050.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_177


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 526 560
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 421 455
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 282 316
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 212 246
IPR002885 Pentatricopeptide_rpt Pfam 181 206
IPR002885 Pentatricopeptide_rpt Pfam 145 173
IPR002885 Pentatricopeptide_rpt Pfam 458 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 561 595
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 317 347
IPR002885 Pentatricopeptide_rpt Pfam 496 538
IPR002885 Pentatricopeptide_rpt Pfam 350 399
IPR002885 Pentatricopeptide_rpt Pfam 281 325
IPR002885 Pentatricopeptide_rpt Pfam 211 260
IPR002885 Pentatricopeptide_rpt TIGRFAM 423 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 214 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 564 592
IPR002885 Pentatricopeptide_rpt TIGRFAM 145 175
IPR002885 Pentatricopeptide_rpt TIGRFAM 529 561
IPR002885 Pentatricopeptide_rpt TIGRFAM 354 386
IPR002885 Pentatricopeptide_rpt TIGRFAM 458 491
IPR002885 Pentatricopeptide_rpt TIGRFAM 249 279
IPR002885 Pentatricopeptide_rpt TIGRFAM 496 527
IPR002885 Pentatricopeptide_rpt TIGRFAM 284 317
IPR002885 Pentatricopeptide_rpt TIGRFAM 389 421
IPR002885 Pentatricopeptide_rpt TIGRFAM 319 346
IPR002885 Pentatricopeptide_rpt TIGRFAM 181 213
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 142 176
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 177 211
IPR011990 TPR-like_helical_dom_sf Gene3D 195 345
IPR011990 TPR-like_helical_dom_sf Gene3D 346 471
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 386 420
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 491 525
IPR011990 TPR-like_helical_dom_sf Gene3D 472 595
IPR011990 TPR-like_helical_dom_sf Gene3D 84 193
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 456 490
IPR002885 Pentatricopeptide_rpt Pfam 557 589
IPR002885 Pentatricopeptide_rpt Pfam 416 448
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 351 385

No CAZYmes available for this sequence

No external refs found!