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  5. Sobic.002G098600.1

Sobic.002G098600.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011785 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011785_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G098600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G098600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 256 362
IPR002885 Pentatricopeptide_rpt TIGRFAM 408 441
IPR002885 Pentatricopeptide_rpt TIGRFAM 275 305
IPR002885 Pentatricopeptide_rpt TIGRFAM 306 335
IPR002885 Pentatricopeptide_rpt TIGRFAM 244 275
IPR002885 Pentatricopeptide_rpt TIGRFAM 213 238
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 406 440
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 178 302
IPR002885 Pentatricopeptide_rpt Pfam 449 471
IPR002885 Pentatricopeptide_rpt Pfam 408 438
IPR002885 Pentatricopeptide_rpt Pfam 380 405
IPR002885 Pentatricopeptide_rpt Pfam 244 273
IPR002885 Pentatricopeptide_rpt Pfam 182 212
IPR002885 Pentatricopeptide_rpt Pfam 213 239
IPR002885 Pentatricopeptide_rpt Pfam 303 352
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 242 272
IPR011990 TPR-like_helical_dom_sf Gene3D 382 581
IPR011990 TPR-like_helical_dom_sf Gene3D 88 238
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 180 214

No CAZYmes available for this sequence

No external refs found!