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  5. Sobic.002G098900.1

Sobic.002G098900.1


Description : phospholipase D delta


Gene families : OG_01_0000938 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000938_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G098900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G098900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_43
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_213


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004630 phospholipase D activity ISM GOs from InterProScan
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0046470 phosphatidylcholine metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000008 C2_dom ProSiteProfiles 1 145
IPR001736 PLipase_D/transphosphatidylase SMART 685 712
IPR001736 PLipase_D/transphosphatidylase SMART 351 386
IPR000008 C2_dom SMART 17 144
IPR001736 PLipase_D/transphosphatidylase ProSiteProfiles 351 386
IPR011402 PLipase_D_pln PIRSF 3 839
IPR015679 PLipase_D_fam PANTHER 1 839
IPR000008 C2_dom Pfam 16 147
IPR035892 C2_domain_sf Gene3D 12 168
IPR024632 PLipase_D_C Pfam 759 829
IPR001736 PLipase_D/transphosphatidylase Pfam 352 386
IPR001736 PLipase_D/transphosphatidylase Pfam 686 712
IPR035892 C2_domain_sf SUPERFAMILY 13 170
IPR001736 PLipase_D/transphosphatidylase ProSiteProfiles 685 712

No CAZYmes available for this sequence

No external refs found!