Sobic.002G104400.1

Description : LRR and NB-ARC domains-containing disease resistance protein

Gene families : OG_01_0007665 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007665_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G104400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G104400.1	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	ISM	GOs from InterProScan
MF	GO:0043565	sequence-specific DNA binding	ISM	GOs from InterProScan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR032675	LRR_dom_sf	Gene3D	1043	1472
IPR003657	WRKY_dom	SMART	1509	1571
IPR002182	NB-ARC	Pfam	719	902
IPR003657	WRKY_dom	Pfam	1510	1569
IPR032675	LRR_dom_sf	Gene3D	476	696
IPR036576	WRKY_dom_sf	Gene3D	1495	1571
IPR006553	Leu-rich_rpt_Cys-con_subtyp	SMART	615	639
IPR006553	Leu-rich_rpt_Cys-con_subtyp	SMART	519	539
IPR006553	Leu-rich_rpt_Cys-con_subtyp	SMART	1373	1402
IPR006553	Leu-rich_rpt_Cys-con_subtyp	SMART	567	594
IPR027417	P-loop_NTPase	Gene3D	697	844
IPR027417	P-loop_NTPase	SUPERFAMILY	698	938
IPR044974	Disease_R_plants	PANTHER	128	1451
IPR003657	WRKY_dom	ProSiteProfiles	1504	1572
IPR036388	WH-like_DNA-bd_sf	Gene3D	918	1013
IPR036576	WRKY_dom_sf	SUPERFAMILY	1503	1571

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.002G104400.1

Expression Profile

Co-expression Networks

Functional Annotation