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  5. Sobic.002G109800.1

Sobic.002G109800.1


Description : chitinase A


Gene families : OG_01_0002770 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002770_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G109800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G109800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_49
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_329


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001223 Glyco_hydro18_cat Pfam 29 284
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 25 293
IPR001579 Glyco_hydro_18_chit_AS ProSitePatterns 144 152
IPR001223 Glyco_hydro18_cat ProSiteProfiles 26 297
IPR045321 Cts1-like CDD 26 295
HMM Family HMM Length Query Length e-Value Query Start Query End
GH18 296 298 6.4e-28 28 285
No external refs found!