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  5. Sobic.002G110400.1

Sobic.002G110400.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0014390 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014390_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G110400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G110400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 122 156
IPR002885 Pentatricopeptide_rpt Pfam 502 526
IPR002885 Pentatricopeptide_rpt Pfam 535 557
IPR002885 Pentatricopeptide_rpt Pfam 434 459
IPR002885 Pentatricopeptide_rpt Pfam 463 493
IPR002885 Pentatricopeptide_rpt Pfam 126 152
IPR002885 Pentatricopeptide_rpt Pfam 334 358
IPR011990 TPR-like_helical_dom_sf Gene3D 305 428
IPR002885 Pentatricopeptide_rpt TIGRFAM 463 497
IPR002885 Pentatricopeptide_rpt TIGRFAM 502 531
IPR002885 Pentatricopeptide_rpt TIGRFAM 126 156
IPR002885 Pentatricopeptide_rpt TIGRFAM 196 225
IPR002885 Pentatricopeptide_rpt TIGRFAM 332 357
IPR002885 Pentatricopeptide_rpt TIGRFAM 226 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 362 395
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 360 394
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 259 293
IPR002885 Pentatricopeptide_rpt Pfam 359 406
IPR002885 Pentatricopeptide_rpt Pfam 223 269
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 224 258
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 496 531
IPR011990 TPR-like_helical_dom_sf Gene3D 480 642
IPR011990 TPR-like_helical_dom_sf Gene3D 124 300
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 461 495

No CAZYmes available for this sequence

No external refs found!