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  5. Sobic.002G116300.1

Sobic.002G116300.1


Description : poly(ADP-ribose) polymerase 2


Gene families : OG_01_0006294 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006294_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G116300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G116300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_190
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_80


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003950 NAD+ ADP-ribosyltransferase activity ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006471 obsolete protein ADP-ribosylation ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
MF GO:0051287 NAD binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003034 SAP_dom ProSiteProfiles 257 291
IPR001510 Znf_PARP Pfam 107 179
IPR001510 Znf_PARP Pfam 11 87
IPR036420 BRCT_dom_sf Gene3D 380 489
IPR036420 BRCT_dom_sf SUPERFAMILY 385 475
IPR001510 Znf_PARP SMART 107 181
IPR001510 Znf_PARP SMART 11 88
IPR004102 Poly(ADP-ribose)pol_reg_dom ProSiteProfiles 628 747
IPR038650 PADR1_C_dom_sf Gene3D 295 355
IPR012982 PARP1-like_PADR1_Zn_ribbon SMART 283 336
IPR004102 Poly(ADP-ribose)pol_reg_dom Pfam 629 760
IPR012317 Poly(ADP-ribose)pol_cat_dom ProSiteProfiles 754 979
IPR008288 PARP PIRSF 1 979
IPR012317 Poly(ADP-ribose)pol_cat_dom Pfam 774 975
IPR036930 WGR_dom_sf SUPERFAMILY 486 611
IPR001357 BRCT_dom SMART 386 465
IPR001510 Znf_PARP ProSiteProfiles 104 176
IPR008893 WGR_domain Pfam 517 595
IPR036616 Poly(ADP-ribose)pol_reg_dom_sf Gene3D 619 763
IPR008893 WGR_domain SMART 517 600
IPR001357 BRCT_dom Pfam 389 462
IPR036616 Poly(ADP-ribose)pol_reg_dom_sf SUPERFAMILY 628 763
IPR012982 PARP1-like_PADR1_Zn_ribbon Pfam 284 334
IPR036957 Znf_PARP_sf Gene3D 100 204
IPR036957 Znf_PARP_sf Gene3D 4 99
IPR001357 BRCT_dom ProSiteProfiles 411 475
IPR001510 Znf_PARP ProSiteProfiles 8 91

No CAZYmes available for this sequence

No external refs found!