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  5. Sobic.002G126500.1

Sobic.002G126500.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0004828 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004828_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G126500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G126500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_150


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom SMART 195 272
IPR000504 RRM_dom SMART 114 188
IPR000504 RRM_dom SMART 291 366
IPR000504 RRM_dom ProSiteProfiles 290 370
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 276 383
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 194 275
IPR000504 RRM_dom ProSiteProfiles 194 278
IPR035979 RBD_domain_sf SUPERFAMILY 114 217
IPR000504 RRM_dom Pfam 292 354
IPR000504 RRM_dom Pfam 198 263
IPR000504 RRM_dom Pfam 115 184
IPR035979 RBD_domain_sf SUPERFAMILY 193 353
IPR000504 RRM_dom ProSiteProfiles 113 192
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 19 193

No CAZYmes available for this sequence

No external refs found!