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  5. Sobic.002G127400.1

Sobic.002G127400.1


Description : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein


Gene families : OG_01_0007567 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007567_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G127400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G127400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_146


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0016798 hydrolase activity, acting on glycosyl bonds ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR008979 Galactose-bd-like_sf SUPERFAMILY 215 370
IPR003305 CenC_carb-bd Pfam 49 186
IPR003305 CenC_carb-bd Pfam 216 354
IPR003305 CenC_carb-bd Pfam 555 696
IPR003305 CenC_carb-bd Pfam 387 520
IPR031158 GH10_AS ProSitePatterns 969 979
IPR008979 Galactose-bd-like_sf SUPERFAMILY 552 713
IPR001000 GH10_dom SMART 792 1042
IPR001000 GH10_dom ProSiteProfiles 746 1041
IPR044846 GH10 PANTHER 375 1098
IPR044846 GH10 PANTHER 37 234
IPR044846 GH10 PANTHER 208 372
IPR008979 Galactose-bd-like_sf SUPERFAMILY 49 201
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 746 1047
IPR001000 GH10_dom PRINTS 823 835
IPR001000 GH10_dom PRINTS 905 916
IPR001000 GH10_dom PRINTS 937 949
IPR001000 GH10_dom Pfam 755 1012
IPR008979 Galactose-bd-like_sf SUPERFAMILY 386 537
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM22 131 1099 1.5e-36 555 696
GH10 303 1099 5.7e-70 754 1035
No external refs found!