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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0013848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013848_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G142700.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G142700.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_332 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_239 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 315 | 415 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 188 | 314 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 420 | 454 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 278 | 312 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 492 | 566 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 416 | 486 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 567 | 635 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 350 | 384 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 385 | 419 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 352 | 386 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 540 | 574 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 575 | 600 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 510 | 539 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 280 | 309 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 140 | 172 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 318 | 350 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 211 | 244 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 458 | 483 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 246 | 279 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 387 | 420 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 423 | 456 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 273 | 300 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 349 | 398 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 537 | 585 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 425 | 467 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 208 | 242 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 503 | 537 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 538 | 572 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 172 | 207 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 243 | 277 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 636 | 793 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 115 | 187 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 611 | 632 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 683 | 711 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 318 | 342 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 455 | 489 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 127 | 184 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 573 | 607 |
No CAZYmes available for this sequence
| No external refs found! |