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  5. Sobic.002G145800.1

Sobic.002G145800.1


Description : RNA binding;abscisic acid binding


Gene families : OG_01_0004625 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004625_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G145800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G145800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_273
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 215 317
IPR001202 WW_dom ProSiteProfiles 620 653
IPR001202 WW_dom Pfam 624 651
IPR000504 RRM_dom ProSiteProfiles 215 295
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 211 300
IPR001202 WW_dom CDD 624 653
IPR001202 WW_dom SMART 621 653
IPR035979 RBD_domain_sf SUPERFAMILY 111 209
IPR000504 RRM_dom SMART 216 291
IPR000504 RRM_dom SMART 125 201
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 112 210
IPR000504 RRM_dom Pfam 126 190
IPR000504 RRM_dom Pfam 217 281
IPR036020 WW_dom_sf SUPERFAMILY 613 654
IPR000504 RRM_dom ProSiteProfiles 124 205

No CAZYmes available for this sequence

No external refs found!