Sobic.002G150550.1

Description : phragmoplastin interacting protein 1

Gene families : OG_01_0000251 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000251_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G150550.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G150550.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_97

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001878	Znf_CCHC	ProSiteProfiles	389	404
IPR001878	Znf_CCHC	Pfam	436	451
IPR036875	Znf_CCHC_sf	SUPERFAMILY	417	453
IPR001878	Znf_CCHC	ProSiteProfiles	437	451
IPR036875	Znf_CCHC_sf	SUPERFAMILY	279	335
IPR036875	Znf_CCHC_sf	SUPERFAMILY	370	412
IPR001878	Znf_CCHC	SMART	436	452
IPR001878	Znf_CCHC	SMART	389	405
IPR001878	Znf_CCHC	SMART	317	333
IPR001878	Znf_CCHC	SMART	284	300
IPR001878	Znf_CCHC	ProSiteProfiles	285	300

No CAZYmes available for this sequence

External Links

No external refs found!