Sobic.002G150733.1

Description : zinc knuckle (CCHC-type) family protein

Gene families : OG_01_0000251 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000251_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G150733.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G150733.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_19
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_245

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036875	Znf_CCHC_sf	SUPERFAMILY	415	471
IPR001878	Znf_CCHC	ProSiteProfiles	421	436
IPR036875	Znf_CCHC_sf	SUPERFAMILY	555	590
IPR001878	Znf_CCHC	ProSiteProfiles	574	588
IPR001878	Znf_CCHC	SMART	420	436
IPR001878	Znf_CCHC	SMART	573	589
IPR001878	Znf_CCHC	SMART	453	469
IPR001878	Znf_CCHC	Pfam	573	588

No CAZYmes available for this sequence

External Links

No external refs found!